trimmomatic: Perform adapter trimming
In honzee/SNPsom: Containerized Somatic Variant Analysis
trimmomatic R Documentation
Perform adapter trimming
Description
Perform Illumina Universal adapter trimming and filter all reads under selected length (default 20).
Usage
trimmomatic(metadata, input_dir, output_dir, t = 2, min_length = 20)
Arguments
metadata
data frame;
input_dir
character; path to the input directory
output_dir
character; path to output directory
t
numeric; number of threads to use; default=2
min_length
numeric; minimum read length to be kept; default=20
honzee/SNPsom documentation built on July 27, 2022, 12:45 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| trimmomatic | R Documentation |
Perform adapter trimming
Description
Perform Illumina Universal adapter trimming and filter all reads under selected length (default 20).
Usage
trimmomatic(metadata, input_dir, output_dir, t = 2, min_length = 20)
Arguments
metadata |
data frame; |
input_dir |
character; path to the input directory |
output_dir |
character; path to output directory |
t |
numeric; number of threads to use; default=2 |
min_length |
numeric; minimum read length to be kept; default=20 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.