MarkDuplicatesSpark: Mark duplicates with MarkDuplicatesSpark
In honzee/SNPsom: Containerized Somatic Variant Analysis
MarkDuplicatesSpark R Documentation
Mark duplicates with MarkDuplicatesSpark
Description
MarkDuplicatesSpark is faster than standard MarkDuplicates from picard tools and produces same results
Usage
MarkDuplicatesSpark(metadata, input_dir, output_dir, t = 2)
Arguments
metadata
data frame;
input_dir
character; path to the input directory
output_dir
character; path to output directory
t
numeric; number of threads to use; default-2
reference
character; path to the fasta genome reference file. Bwa-mem2 created index must be in the same directory.
honzee/SNPsom documentation built on July 27, 2022, 12:45 a.m.
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| MarkDuplicatesSpark | R Documentation |
Mark duplicates with MarkDuplicatesSpark
Description
MarkDuplicatesSpark is faster than standard MarkDuplicates from picard tools and produces same results
Usage
MarkDuplicatesSpark(metadata, input_dir, output_dir, t = 2)
Arguments
metadata |
data frame; |
input_dir |
character; path to the input directory |
output_dir |
character; path to output directory |
t |
numeric; number of threads to use; default-2 |
reference |
character; path to the fasta genome reference file. Bwa-mem2 created index must be in the same directory. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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