export_cor_network: Output co-network object

In houyunhuang/ggcor: Extended tools for correlation analysis and visualization

Description

Functions to output edges or nodes data of co-network to a file.

Usage

export_cor_network(x, file = "", what = "edges", sep = ",", ...)

## S3 method for class 'cor_network'
export_cor_network(x, file = "", what = "edges", sep = ",", ...)

## S3 method for class 'cor_tbl'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

## S3 method for class 'mantel_tbl'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

## S3 method for class 'pro_tbl'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

## S3 method for class 'correlate'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  row.names = NULL,
  col.names = NULL,
  rm.dup = TRUE,
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

## S3 method for class 'rcorr'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  row.names = NULL,
  col.names = NULL,
  rm.dup = TRUE,
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

## S3 method for class 'corr.test'
export_cor_network(
  x,
  file = "",
  what = "edges",
  sep = ",",
  row.names = NULL,
  col.names = NULL,
  rm.dup = TRUE,
  simplify = TRUE,
  r.thres = 0.6,
  r.absolute = TRUE,
  p.thres = 0.05,
  ...
)

Arguments

x	R object can be convert to cor_network.
file	a character string naming a file for writing. "" indicates output to the console.
what	either "edges" (default) or "nodes" will be output.
sep	the field separator string (defaults to ",").
...	extra params passing to write.table.
simplify	logical value (defaults to TRUE) indicating whether to delete nodes without edge connections.
r.thres	a numeric value.
r.absolute	logical value (defaults to TRUE).
p.thres	a numeric value.
row.names, col.names	row and column names of correlation matrix.
rm.dup	logical (defaults to TRUE) indicating whether remove duplicate rows. If TRUE, the correlation between A-B and B-A is retained only A-B.

Author(s)

Houyun Huang, Lei Zhou, Jian Chen, Taiyun Wei

See Also

write.table.

houyunhuang/ggcor documentation built on July 22, 2020, 8:31 p.m.