Files in hsmaan/LoopRig
Integration and Analysis of Chromatin Loop Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LoopRig.Rproj
NAMESPACE
NEWS.md
R/ConsensusLoops.R
R/DropLoops.R
R/ElementsToRanges.R
R/ExportBED.R
R/LinkedElements.R
R/LoopsToRanges.R
R/ScaffoldElements.R
R/StackedElements.R
README.Rmd
README.html
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
cran-comments.md
docs/404.html
docs/LICENSE-text.html
docs/articles/LoopRig-Tutorial.html
docs/articles/LoopRig_Tutorial.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ConsensusLoops.html
docs/reference/DropLoops.html
docs/reference/ElementsToRanges.html
docs/reference/ExportBED.html
docs/reference/LinkedElements.html
docs/reference/LoopsToRanges.html
docs/reference/ScaffoldElements.html
docs/reference/StackedElements.html
docs/reference/figures/looprig_logo.png
docs/reference/index.html
inst/extdata/elements/enhancers.bed
inst/extdata/elements/exp_bed_dummy.bed
inst/extdata/elements/promoters.bed
inst/extdata/loops/exp_bed_dummy.bed
inst/extdata/loops/ovary_hg19.bedpe
inst/extdata/loops/ovary_hg19_mcol.bedpe
inst/extdata/loops/pancreas_hg19.bedpe
inst/extdata/loops/spleen_hg19.bedpe
man/ConsensusLoops.Rd
man/DropLoops.Rd
man/ElementsToRanges.Rd
man/ExportBED.Rd
man/LinkedElements.Rd
man/LoopsToRanges.Rd
man/ScaffoldElements.Rd
man/StackedElements.Rd
man/figures/looprig_logo.png
tests/testthat.R
tests/testthat/test-ConsensusLoops.R
tests/testthat/test-DropLoops.R
tests/testthat/test-ElementsToRanges.R
tests/testthat/test-ExportBED.R
tests/testthat/test-LinkedElements.R
tests/testthat/test-LoopsToRanges.R
tests/testthat/test-ScaffoldElements.R
tests/testthat/test-StackedElements.R
vignettes/.gitignore
vignettes/LoopRig_Tutorial.Rmd
