Description Usage Arguments Details Value

Loads the matched pair data to be analyzed by PAIRADISE.

1 | ```
load.data(my.data)
``` |

`my.data` |
Data frame containing grouped data to be analyzed. |

The data frame has 7 columns, arranged as follows: Column 1 contains the ID of the exons/events. Column 2 contains counts of isoform 1 corresponding to the first group. Column 3 contains counts of isoform 2 corresponding to the first group. Column 4 contains counts of isoform 1 corresponding to the second group. Column 5 contains counts of isoform 2 corresponding to the second group. Replicates in columns 2-5 should be separated by commas, e.g. 1623,432,6 for three replicates. Column 6 contains the effective length of isoform 1. Column 7 contains the effective length of isoform 2.

The function load.data returns a list containing the following entries:

`I1` |
Group 1 isoform 1 counts for each replicate. |

`S1` |
Group 1 isoform 2 counts for each replicate. |

`I2` |
Group 2 isoform 1 counts for each replicate. |

`S2` |
Group 2 isoform 2 counts for each replicate. |

`length_I` |
Effective lengths of isoform 1. |

`length_S` |
Effective lengths of isoform 2. |

`exonList` |
IDs of the exons/events. |

`nExon` |
Number of exons/events. |

`M` |
Vector containing the number of replicates per exon/event. |

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