README.md
In hubentu/RcwlPipelines: Bioinformatics pipelines based on Rcwl
RcwlPipelines
The RcwlPipelines package manages a collection of Bioinformatics tools and pipeline recipes based on Rcwl. The pre-built and pre-tested tools and pipelines are highly modularized with easy customization to meet different bioinformatics data analysis needs.
Installation
The package can be installed from Bioconductor (>= 3.9):
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcwlPipelines")
# Or from github
BiocManager::install("rworkflow/RcwlPipelines")
Get started
cwlUpdate()
cwlSearch("STAR")
STAR <- cwlLoad("tl_STAR")
User Guide
vignette(package = "RcwlPipelines")
hubentu/RcwlPipelines documentation built on Nov. 2, 2022, 1:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
RcwlPipelines
The RcwlPipelines package manages a collection of Bioinformatics tools and pipeline recipes based on Rcwl. The pre-built and pre-tested tools and pipelines are highly modularized with easy customization to meet different bioinformatics data analysis needs.
Installation
The package can be installed from Bioconductor (>= 3.9):
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcwlPipelines")
# Or from github
BiocManager::install("rworkflow/RcwlPipelines")
Get started
cwlUpdate()
cwlSearch("STAR")
STAR <- cwlLoad("tl_STAR")
User Guide
vignette(package = "RcwlPipelines")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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