cwlInstall | R Documentation |
To source Rcwl scripts
cwlInstall(rname, bfc = NULL, env = .GlobalEnv)
rname |
The name or filepath of tool or pipeline to install ('rname' or 'fpath' column from the 'bfc' object returned from 'cwlSearch'). |
bfc |
The 'BiocFileCache' object for the recipes returned from 'cwlUpdate'. The default is NULL which automatically detect the "Rcwl" cache directory. |
env |
The R enviroment to export to. The default is '.GlobalEnv'. |
Note to developers that the dependent Rcwl scripts should be included in the recipe with '@include' tag.
## Not run: tls <- cwlSearch("bwa") tls$rname cwlInstall("tl_bwa") cwlInstall(tls$fpath[tls$rname == "tl_bwa"]) ## equivalent bwa ## End(Not run)
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