NEWS.md

In hugheylab/deltaccd: Quantify Rhythmic Gene Co-Expression Relative to a Reference

deltaccd 1.0.4

• Update styling based on lintr.

deltaccd 1.0.3

• Updated tests for calcDeltaCCDSimple andd calcDeltaCCD.

deltaccd 1.0.2

• Updated examples.

deltaccd 1.0.1

• Downsampled genes in GSE19188 to reduce package size.
• Fixed recent bug in deltaCCD calculation.

deltaccd 0.2.7

• calcCCD and calcDeltaCCD now produce .csv lists of genes with zero group-wise variance or which are missing from the reference.

deltaccd 0.2.6

• Fixed bug in calcCCD.

deltaccd 0.2.5

• Replaced globalVariables call to get around R CMD check warning with null variable assignment and using the rlang .data variable for ggplot2.

deltaccd 0.2.4

• Added tests for all functions.

deltaccd 0.2.3

• Modified calcCCD and calcDeltaCCD to throw errors for genes with zero group-wise variance.
• calcCCD and calcDeltaCCD now require all genes from the reference to be present in the expression matrix passed to emat.

deltaccd 0.2.2

• Updated gene symbol.

deltaccd 0.2.1

• Fixed bugs in plotRefHeatmap().
• Ordered genes in human blood reference to make heatmap more interpretable.

deltaccd 0.2.0

• Modified calcCorr(), calcCCD(), calcDeltaCCD() to use data.table.
• Added optional scale argument to calcCCD() and calcDeltaCCD() to scale CCD by number of gene pairs.
• Added reference correlations for human blood.

deltaccd 0.1.2

• Fixed obvious bug in plotHeatmap().

deltaccd 0.1

• Added pkgdown site.
• Updated documentation.

hugheylab/deltaccd documentation built on Dec. 3, 2022, 9:51 a.m.