cran-comments.md

In hugheylab/deltaccd: Quantify Rhythmic Gene Co-Expression Relative to a Reference

R CMD check results

Local check

devtools::check() result:

0 errors ✓ | 0 warnings ✓ | 0 notes ✓

Online check

devtools::check_rhub() result:

checking CRAN incoming feasibility ... NOTE Maintainer: 'Jake Hughey [e-mail]'

New submission

Possibly misspelled words in DESCRIPTION:
  Shilts (10:32)
  al (10:42)
  et (10:39)
  transcriptome (8:56)

checking for detritus in the temp directory ... NOTE Found the following files/directories: 'lastMiKTeXException'

0 errors ✓ | 0 warnings ✓ | 2 notes x

Notes: - This is a resubmission of the first time this package was sent to CRAN, and the words are names and correctly spelled terms, so ignore this. - The second note only occurs on the Windows Server rhub environment, and from what I have seen about these types of notes they do not occur when building and checking on CRAN.

You can also see the results of R CMD check on Windows, Linux, and MacOS by going to the GitHub Actions run labeled check-deploy here.

Resubmission notes

Email response to initial submission: "Thanks,

\dontrun{} should only be used if the example really cannot be executed (e.g. because of missing additional software, missing API keys, ...) by the user. That's why wrapping examples in \dontrun{} adds the comment ("# Not run:") as a warning for the user. Does not seem necessary.

If you use a package which is only needed in examples, please list it in 'Suggests' and wrap these examples in if(requireNamespace("pkgname")){} instead.

Please fix and resubmit.

Best, Gregor Seyer"

• We updated the examples and documentation based on this feedback.

Downstream dependencies

There are no downstream dependencies for deltaccd.

Tests

When checking locally, tests take about 2.1s total. If this is too long for tests let us know and we can skip some tests on CRAN.

hugheylab/deltaccd documentation built on Dec. 3, 2022, 9:51 a.m.