API for humburg/tileHMM
Hidden Markov Models for ChIP-on-Chip Analysis

Global functions
.baumWelchEmission,contHMM,contDist,list-method Man page Man page
.baumWelchEmission,contHMM,tDist,list-method Man page
.baumWelchStep,contHMM,list-method Man page
.viterbiTrainingEmission,contHMM,list,list-method Man page
[.contDist Man page
[.contHMM Man page
[.discDist Man page
[.tDist Man page
[<-.contDist Man page
[<-.tDist Man page
[[.discDist Man page
_backward Man page
_baumWelch_trans Man page
_forward Man page
_get_obs_prob Man page
_log_sum Man page
_viterbi Man page
as.data.frame.discDist Man page Source code
as.matrix.discDist Man page Source code
as.vector.discDist Man page Source code
backward Man page
backward,hmm-method Man page
baumWelch Man page
baumWelch,hmm,list-method Man page
baumWelchInit Source code
baumWelchTransition Source code
calcU Source code
contDist-class Man page
contHMM-access Man page
contHMM-class Man page
df.fun Source code
discDist-class Man page
dist-class Man page
find.df Source code
forward Man page
forward,hmm-method Man page
generate.data Man page Source code
get.init Source code
getHMM Man page Source code
gff2index Man page Source code
hmm-class Man page
hmm.setup Man page Source code
initialize,contDist-method Man page
initialize,contHMM Man page
initialize,contHMM-method Man page
initialize,discDist-method Man page
initialize,tDist-method Man page
internals Man page
length,discDist-method Man page
length,hmm-method Man page
logSum Man page Source code
new,contDist-method Man page
new,contHMM-method Man page
new,discDist-method Man page
new,tDist-method Man page
plot Man page
plot.contDist Man page Source code
plot.contHMM Man page Source code
plot.tDist Man page
posterior Man page Source code
reg2gff Man page Source code
region.length Man page Source code
region.position Man page Source code
remove.short Man page Source code
sampleObs Man page
sampleObs,discDist,numeric-method Man page Man page
sampleObs,tDist,numeric-method Man page
sampleSeq Man page
sampleSeq,contHMM,numeric-method Man page Man page
show,contDist-method Man page
show,hmm-method Man page
shrinkt.st Man page Source code
simChIP Man page
states Man page
states,hmm-method Man page
tDist-class Man page
tileHMM Man page
tileHMM-package Man page
viterbi Man page
viterbi,hmm-method Man page
viterbiEM Man page Source code
viterbiTraining Man page
viterbiTraining,hmm,list-method Man page
humburg/tileHMM documentation built on May 17, 2017, 12:05 a.m.