Description Usage Arguments Details Value
View source: R/RunMultiplePlp.R
create the study population settings
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | createStudyPopulationSettings(
binary = T,
includeAllOutcomes = T,
firstExposureOnly = FALSE,
washoutPeriod = 0,
removeSubjectsWithPriorOutcome = TRUE,
priorOutcomeLookback = 99999,
requireTimeAtRisk = T,
minTimeAtRisk = 364,
riskWindowStart = 1,
startAnchor = "cohort start",
addExposureDaysToStart,
riskWindowEnd = 365,
endAnchor = "cohort start",
addExposureDaysToEnd,
verbosity = "INFO"
)
|
binary |
Forces the outcomeCount to be 0 or 1 (use for binary prediction problems) |
includeAllOutcomes |
(binary) indicating whether to include people with outcomes who are not observed for the whole at risk period |
firstExposureOnly |
Should only the first exposure per subject be included? Note that
this is typically done in the |
washoutPeriod |
The mininum required continuous observation time prior to index date for a person to be included in the cohort. |
removeSubjectsWithPriorOutcome |
Remove subjects that have the outcome prior to the risk window start? |
priorOutcomeLookback |
How many days should we look back when identifying prior outcomes? |
requireTimeAtRisk |
Should subject without time at risk be removed? |
minTimeAtRisk |
The minimum number of days at risk required to be included |
riskWindowStart |
The start of the risk window (in days) relative to the index date (+
days of exposure if the |
startAnchor |
The anchor point for the start of the risk window. Can be "cohort start" or "cohort end". |
addExposureDaysToStart |
DEPRECATED: Add the length of exposure the start of the risk window? Use |
riskWindowEnd |
The end of the risk window (in days) relative to the index data (+
days of exposure if the |
endAnchor |
The anchor point for the end of the risk window. Can be "cohort start" or "cohort end". |
addExposureDaysToEnd |
DEPRECATED: Add the length of exposure the risk window? Use |
verbosity |
Sets the level of the verbosity. If the log level is at or higher in priority than the logger threshold, a message will print. The levels are:
#' |
Takes as input the inputs to create study population
A list containing all the settings required for creating the study population
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