outcomeSurvivalPlot: Plot the outcome incidence over time

In hxia/plp-git-demo: Package for patient level prediction using data in the OMOP Common Data Model

Description

Plot the outcome incidence over time

Usage

outcomeSurvivalPlot(
  plpData,
  outcomeId,
  removeSubjectsWithPriorOutcome = T,
  riskWindowStart = 1,
  riskWindowEnd = 3650,
  riskTable = T,
  confInt = T,
  yLabel = "Fraction of those who are outcome free in target population"
)

Arguments

plpData	The plpData object returned by running getPlpData()
outcomeId	The cohort id corresponding to the outcome
removeSubjectsWithPriorOutcome	Remove patients who have had the outcome before their target cohort index date from the plot
riskWindowStart	(integer) The time-at-risk starts at target cohort index date plus this value
riskWindowEnd	(integer) The time-at-risk ends at target cohort index date plus this value
riskTable	(binary) Whether to include a table at the bottom of the plot showing the number of people at risk over time
confInt	(binary) Whether to include a confidence interval
yLabel	(string) The label for the y-axis

Details

This creates a survival plot that can be used to pick a suitable time-at-risk period

Value

TRUE if it ran

hxia/plp-git-demo documentation built on March 19, 2021, 1:54 a.m.