musCh1fc: SRX681996: GSM1480302: Basal 2 dL #2; Mus musculus; RNA-Seq

In hyf97ca/hotgenes: Simulates Heat Physics on your RNA-seq Dataset for More Compelling Visualization

Description

A sample dataset processed following instructions from https://bioinformatics-core-shared-training.github.io/RNAseq-R/align-and-count.nb.html
In the provided instructions truncated data was used; however this dataset uses the full data of the last sequencing run, although the index was constructed using only chr1.

Usage

musCh1fc

Format

A list of 4 objects

counts

count per exon

annotation

GeneID, Chr, Start, End, Strand, Length: annotation of exon, index is shared with that in counts

targets

dataset listing. Only 1 is used in this featureCounts output: SRR1552455.1.fastq.subread.BAM which delineates the pipeline it went through previously:
fastq -> rsubread

stat

Statistics about this featureCounts run. Not used in this package, but is provided for completion.

Details

Phipson, B., Doyle, M., & Dashnow, H. (2017). RNA-seq analysis in R. Retrieved from https://bioinformatics-core-shared-training.github.io/RNAseq-R/align-and-count.nb.html

Source

https://www.ncbi.nlm.nih.gov/sra?term=SRX681996<br/> Fu, N. Y., Rios, A. C., Pal, B., Soetanto, R., Lun, A. T. L., Liu, K., . . . Visvader, J. E. (2015). EGF-mediated induction of Mcl-1 at the switch to lactation is essential for alveolar cell survival. Nature Cell Biology, 17(4), 365–375. doi: 10.1038/ncb3117

hyf97ca/hotgenes documentation built on Dec. 8, 2019, 12:41 p.m.