simulateHeatSpread: 'simulateHeatSpread'

In hyf97ca/hotgenes: Simulates Heat Physics on your RNA-seq Dataset for More Compelling Visualization

Description

Simulates heat spread through conductance on (a) strand model(s). Kind of looks like anti-aliasing. Makes smaller expressed exons more visible.

Usage

simulateHeatSpread(.strandModel, conductivity, iterations)

Arguments

.strandModel	Strand model from generateStrandModel
conductivity	numeric between 0-1: 1 implies perfect equalization of heat between two adjacent cells in 1 iteration, 0 implies no heat transfer
iterations	integer number of cycles to simulate: should be 1 or greater

Value

simulated strand model

Examples

## Not run: 
sm <- generateStrandModel(1, 195471971, musCh1fc, "chr1", "-", 100000)
smh <- simulateHeatSpread(sm, 0.001, 1000)
smh1 <- simulateHeatSpread(sm, 1, 100)

## End(Not run)

hyf97ca/hotgenes documentation built on Dec. 8, 2019, 12:41 p.m.