Man pages for hzc363/MetaCyto
MetaCyto: A package for meta-analysis of cytometry data
| autoCluster.batch | Cluster the preprocessed fcs files from different studies in... |
| clusterStats | Derive summary statistics for clusters |
| collectData | Collect and combine data from multiple csv files of the same... |
| densityPlot | Draw density plot for each cell cluster. |
| fcsInfoParser | Organize fcs files in a study from ImmPort into panels |
| filterLabels | Filter cluster labels |
| findCutoff | Find cutoff for a 1D distribution |
| flowHC | Cluster cytometry data using hierarchical clustering |
| flowSOM.MC | Cluster cytometry data using FlowSOM |
| glmAnalysis | Perform generalized linear model analysis to estimate effect... |
| labelCluster | Label each cluster as "+" or "-" or neutral for each marker |
| labelSummary | Make a summary for the labels (cell populations) identified... |
| markerFinder | Find markers in a flow frame object |
| metaAnalysis | Performs meta-analysis |
| nameUpdator | Used to update marker names |
| panelSummary | Summarize markers in panels. |
| plotGA | Plot the result from the glmAnalysis function |
| preprocessing | Preprocess fcs files from a single experiment |
| preprocessing.batch | Preprocessing fcs files from different studies in batch. |
| sampleInfoParser | Collect sample information for fcs files in a study from... |
| searchCluster | Search for clusters using pre-defined labels |
| searchCluster.batch | Search for clusters using pre-defined labels in cytometry... |
| set2Frame | Combine cells in a flow set into a flow frame. |
