OverlapMatrix: Display Pairwise Overlap Measures
In ialmodovar/SynClustR: Syncytial Clustering Algorithms in R

overlap.map

R Documentation

Display Pairwise Overlap Measures

Description

Display the map of pairwise overlap measures of Maitra and Melnykov (JCGS, 2012)

Usage

overlap.map(overlap.mat, map.col = c("#FFFFD9","#EDF8B1",
"#C7E9B4","#7FCDBB","#41B6C4","#1D91C0","#225EA8","#253494","#081D58"),
linescol = "magenta", map.range = NULL, lab.col = 1,
lab.cex = 0.95, map.cex = 0.85, legend.cex = 1)

Arguments

`overlap.mat`	matrix of total pairwise overlaps (necessarily symmetric)
`map.col`	colormap for the mapping. Default is Green to Blue palette from RColorBrewer
`linescol`	color for the lines drawing the squares
`map.range`	range of the overlap map (default: minimum and maximum of lower triangle of the matrix)
`lab.col`	color of the labels (same as nrow(matrix) if provided)
`lab.cex`	character size of the label
`map.cex`	character size of the overlap values laid on the map
`legend.cex`	character size of the legend text (does not work always)

Details

Provides map of overlap values for each group of mixture model.

Author(s)

Israel Almodovar-Rivera and Ranjan Maitra.

References

Maitra, R. (2010). A re-defined and generalized percent-overlap-of-activation measure for studies of fMRI reproducibility and its use in identifying outlier activation maps. Neuroimage, 50(1), 124-135.

ialmodovar/SynClustR documentation built on July 7, 2023, 12:18 a.m.