tx_cogs: Extract orthologous groups from a taxon id
In iaradsouza1/ppgp: Preprocess funcions for geneplast package
Description
Usage
Arguments
Value
Examples
Description
Extract orthologous groups from a taxon id
Usage
1
tx_cogs(path, tax_id)
Arguments
path
Path to COG maps file from STRINGdb.
tax_id
A numeric vector of length 1 with the taxon id of interest.
Value
A data.frame with two columns: the ensembl peptide id and the orthologous groups
Examples
1
mouse_cogs <- tx_cogs("~/Downloads/COG.mappings.v10.5.txt", 10090)
iaradsouza1/ppgp documentation built on May 21, 2019, 1:19 p.m.
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Description Usage Arguments Value Examples
Description
Extract orthologous groups from a taxon id
Usage
1 | tx_cogs(path, tax_id)
|
Arguments
path |
Path to COG maps file from STRINGdb. |
tax_id |
A numeric vector of length 1 with the taxon id of interest. |
Value
A data.frame with two columns: the ensembl peptide id and the orthologous groups
Examples
1 | mouse_cogs <- tx_cogs("~/Downloads/COG.mappings.v10.5.txt", 10090)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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