dot-fillwithNA: fill the gaps for segment-level SCNA data with NA
In ibphuangchen/genomicWidgets: Useful SCNA and DNA methylation analysis tools
Description
Usage
Arguments
Value
Description
fill the gaps for single sample's segment-level SCNA data with NA
Usage
1
.fillwithNA(segDf, totalChrRangeObj)
Arguments
segDf
segment-level SCNA data frame containing only one sample. This is usually the same input as GISTIC2. Make sure there are these columns "sample", "chromosome", "start", "end", "log2".
totalChrRangeObj
a GenomicRanges object, specifying the lengths of all chromosomes
Value
a data frame with gap-filled segment-level SCNA data
ibphuangchen/genomicWidgets documentation built on Aug. 20, 2021, 10:55 a.m.
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Description Usage Arguments Value
Description
fill the gaps for single sample's segment-level SCNA data with NA
Usage
1 | .fillwithNA(segDf, totalChrRangeObj)
|
Arguments
segDf |
segment-level SCNA data frame containing only one sample. This is usually the same input as GISTIC2. Make sure there are these columns "sample", "chromosome", "start", "end", "log2". |
totalChrRangeObj |
a GenomicRanges object, specifying the lengths of all chromosomes |
Value
a data frame with gap-filled segment-level SCNA data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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