dot-selectRange: Subset genomic ranges from a single sample's segment-level...

In ibphuangchen/genomicWidgets: Useful SCNA and DNA methylation analysis tools

Description

Subset genomic ranges from a single sample's segment-level SCNA data

Usage

.selectRange(
  segDf,
  chr = NULL,
  start = NULL,
  end = NULL,
  genomeVerison = "hg38"
)

Arguments

segDf	segment-level SCNA data frame containing only one sample. This is usually the same input as GISTIC2. Make sure there are these columns: "sample", "chromosome", "start", "end", "log2".
chr	a character vector specifying which chromosome(s) to select
start	a integer vector specifying the start positions of each chromosome. If NULL, the position will be the begining of the chromosome(s). Default is NULL.
end	a integer vector specifying the end positions of each chromosome. If NULL, the position will be the end of the chromosome(s). Default is NULL.
genomeVerison	which genomeVersion are you working on? Can be either 'hg38' and 'hg19'. Default is 'hg38'.

Value

a data frame representing the subsetted segment-level SCNA data from the input.

ibphuangchen/genomicWidgets documentation built on Aug. 20, 2021, 10:55 a.m.