clean_sag: Clean SAG reference points and summary table
In ices-tools-prod/fisheryO: Fisheries Overviews for ICES Advice

Description Usage Arguments Value Note Author(s) See Also Examples

clean_sag returns a merged and tidied SAG reference points and summary table and a formatted (.html) stock list

1	clean_sag(active_year = 2016)

active_year

numeric of the stock database version. e.g., 2016

list of stock_list_frmt (data frame) and sag_complete_summary (tbl_df)

Periodically, ICES adds or removes stocks from the advisory process. The function returns the SAG reference points and summary table for all published (in SAG) and active stocks for a given year.

Scott Large

Used in stock_trends_fun to make clickable information on dynamic line plots of F and SSB relative to F<sub>MSY</sub> and MSY B<sub>trigger</sub> reference points for stocks of a fish category for an ecoregion. Also, used in frmt_summary_table.

Input data: stock_list_raw, sag_summary_raw,sag_refpts_raw, and sag_keys_raw.