Estimation of Equilibrium Reference Points for Fisheries

Bevholt | stock recruitment function |

bevholt2 | stock recruitment function |

convertDat | plotMSY |

convertSumSen | Convert sum and sen files |

eqsim_ggplot | Plots of the results from eqsim |

eqsim_plot | Plots of the results from eqsim |

eqsim_plot_range | Calculate Fmsy range |

eqsim_range | Calculate Fmsy range |

eqsim_run | simulates the equilibrium results for a population |

eqsr_Buckland | stock recruitment function |

eqsr_fit | Stock recruitment fit |

eqsr_plot | plot simulated predictive distribution of recruitment |

fitModels | Stock recruitment fit |

fitModelsBuck | stock recruitment function |

fitModelsSimmonds | stock recruitment function |

icesStocks | icesStocks |

initial | Get starting values for models |

llik | the log-likelihood of the rectuit function |

LLmodplot | plots the fits for each model considered in 'fitModels' |

LLplot | plots the ordered posterior densities accross MCMC iterations... |

loader | Progress function |

MH | Runs a Metropolis Hasting MCMC on a stock recruit model |

msy-package | Estimation of equilibrium reference points for fish stocks |

plotMSY | plotMSY |

read.Lowestoft | plotMSY |

read.Stockfile | plotMSY |

Ricker | stock recruitment function |

scaleProposal | Propose a multiplicatively uniform variable. |

Segreg | stock recruitment function |

segreg2 | stock recruitment function |

smooth_hockey | stock recruitment function |

SRplot | plot simulated predictive distribution of recruitment |

updateparam | performs a single |

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