PlotFSS: plotFSS

In ick003/RecurPart: Forward Selection Scan Statistic

Description

Plotting method for FSS

Usage

  plotFSS(fssObj,...)
  
  ## Default S3 method:
plotFSS(fssObj,...)

Arguments

fssObj	an output of the FSS function.
option	selecting a displaying option.
cellIndices	selecting the cells for time series plotting.
dspSlices	selecting slices to display for outbreak overview.
titles	character string.
pause	logical. Whether or not pause between each plot.
...	Additional parameters

Value

A plot.

Author(s)

Adrien Ickowicz <[e-mail]>, Ross Sparks <[e-mail]>, Thomas Lo <[e-mail]>

Maintainer: Adrien Ickowicz <[e-mail]>

Examples

cellIndices = rbind(c(2,9),c(2,10),c(3,9),c(3,10),
                    c(7,5),c(7,6),c(8,6),c(8,7))
plotIte <- 8

dspSlices <- 1:10   # a vector containing time slices to be displayed

# allocate the first 24 months to find monthly means of each cell, and
# assuming 30 days for a month
test <- FSS(AEGISS_ixyt, num1Slice=30, num1Period=12, numPeriods=2, numX=10, numY=9, 
            plotIte=plotIte, cellIndices=cellIndices, data_poly=AEGISS_poly, lambda=0.9, 
            dspSlices=dspSlices, fillThreshold=0.95, colPoints="cyan")

plotFlags <- c(TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE)


if (plotFlags[1]) plotFSS(test, option="full data", titles=c("AEGISS all data"), pause=TRUE)

if (plotFlags[2]) plotFSS(test, option="overall time series", titles=NULL, pause=TRUE)

if (plotFlags[3]) plotFSS(test, option="specific time series")

if (plotFlags[4]) plotFSS(test, option="possible outbreaks")

if (plotFlags[5]) plotFSS(test, option="overall tree")

if (plotFlags[6]) plotFSS(test, option="sub-trees")

if (plotFlags[7]) plotFSS(test, option="partitions")

if (plotFlags[8]) plotFSS(test, option="outbreak detection")

tempCellIndices = rbind(c(3,9),c(3,10))
if (plotFlags[9]) plotFSS(test, option="specific time series", cellIndices=tempCellIndices)

tempDspSlices <- 1:3   # a vector containing time slices to be displayed
if (plotFlags[10]) plotFSS(test, option="possible outbreaks", dspSlices=tempDspSlices)
  

ick003/RecurPart documentation built on May 18, 2019, 2:32 a.m.