API for idot/deseq2analysis
DESeq2 analysis
| Global functions | |
|---|---|
| LOG | Source code |
| analyseFromConfig | Source code |
| checkCountColumnsDesignSamples | Source code |
| createGroupComparisons | Source code |
| datatabGO | Source code |
| datatabGSEA | Source code |
| datatabKEGG | Source code |
| datatabReact | Source code |
| deseqDataFromMatrix | Source code |
| deseqResult | Source code |
| digit5id | Source code |
| emptyTable | Source code |
| ensembl_url | Source code |
| extract | Source code |
| extractComparisonsList | Source code |
| extractGSEAOverviewCollapsedTop | Source code |
| extractMultiLFCSignif | Source code |
| extractMultiResultsSignif | Source code |
| extractSignif | Source code |
| extractUpDownSignif | Source code |
| filterGenesGO | Source code |
| generateMDLink | Source code |
| getAnnotationFromConfig | Source code |
| getAnnotationFromIds | Source code |
| getComparison | Source code |
| getComparisonFoldChange | Source code |
| getComparisonString | Source code |
| getComparisonTitle | Source code |
| getComparisons | Source code |
| getCounts | Source code |
| getEntrezIds | Source code |
| getFilterThreshold | Source code |
| getGSEACollapsedPathways | Source code |
| getNegExplanation | Source code |
| getPosExplanation | Source code |
| getWantedResults | Source code |
| goparameterdescription | Source code |
| keep | Source code |
| knitLabels | Source code |
| ncbi_url | Source code |
| outTableFunctionalPath | Source code |
| outputFilesTable | Source code |
| plotAlignments | Source code |
| plotAnnotationDistribution | Source code |
| plotCoverages | Source code |
| plotDupFit | Source code |
| plotEmpty | Source code |
| plotGSEAOverviewTop | Source code |
| plotMAPlot | Source code |
| plotPvalDist | Source code |
| plotVulcano | Source code |
| plotZero | Source code |
| prepareDataFromConfig | Source code |
| readComparisonsTable | Source code |
| readCounts | Source code |
| readCountsToDeseq2 | Source code |
| readEnsembl | Source code |
| readGrouping | Source code |
| saveTables | Source code |
| sfformat | Source code |
| species2map | Source code |
| speciesIDTypeToLib | Source code |
| speciesTable | Source code |
| testFunctional | Source code |
| testFunctionalEnrich | Source code |
| testGO | Source code |
| testGSEA | Source code |
| testKEGG | Source code |
| testReactome | Source code |
| testfunctionalFromConfig | Source code |
| toSortedTibble | Source code |
| to_link | Source code |
| vbcf_bamname2id | Source code |
| zipall | Source code |
| zipfunctabs | Source code |
