API for idot/deseq2analysis
DESeq2 analysis

Global functions
LOG Source code
analyseFromConfig Source code
checkCountColumnsDesignSamples Source code
createGroupComparisons Source code
datatabGO Source code
datatabGSEA Source code
datatabKEGG Source code
datatabReact Source code
deseqDataFromMatrix Source code
deseqResult Source code
digit5id Source code
emptyTable Source code
ensembl_url Source code
extract Source code
extractComparisonsList Source code
extractGSEAOverviewCollapsedTop Source code
extractMultiLFCSignif Source code
extractMultiResultsSignif Source code
extractSignif Source code
extractUpDownSignif Source code
filterGenesGO Source code
generateMDLink Source code
getAnnotationFromConfig Source code
getAnnotationFromIds Source code
getComparison Source code
getComparisonFoldChange Source code
getComparisonString Source code
getComparisonTitle Source code
getComparisons Source code
getCounts Source code
getEntrezIds Source code
getFilterThreshold Source code
getGSEACollapsedPathways Source code
getNegExplanation Source code
getPosExplanation Source code
getWantedResults Source code
goparameterdescription Source code
keep Source code
knitLabels Source code
ncbi_url Source code
outTableFunctionalPath Source code
outputFilesTable Source code
plotAlignments Source code
plotAnnotationDistribution Source code
plotCoverages Source code
plotDupFit Source code
plotEmpty Source code
plotGSEAOverviewTop Source code
plotMAPlot Source code
plotPvalDist Source code
plotVulcano Source code
plotZero Source code
prepareDataFromConfig Source code
readComparisonsTable Source code
readCounts Source code
readCountsToDeseq2 Source code
readEnsembl Source code
readGrouping Source code
saveTables Source code
sfformat Source code
species2map Source code
speciesIDTypeToLib Source code
speciesTable Source code
testFunctional Source code
testFunctionalEnrich Source code
testGO Source code
testGSEA Source code
testKEGG Source code
testReactome Source code
testfunctionalFromConfig Source code
toSortedTibble Source code
to_link Source code
vbcf_bamname2id Source code
zipall Source code
zipfunctabs Source code
idot/deseq2analysis documentation built on Aug. 14, 2021, 5:12 a.m.