PrepareInuputFiles: Prepare input file in standard formats of quantification...

In idrblab/EVALFQ: R Package for Evaluating Label-Free Proteome Quantification

Prepare input file in standard formats of quantification tools

Description

process the output files obtained from popular proteomic quantification software (>=18).

Usage

PrepareInuputFiles(acquisitionmethods, rawdataset, lable)

Arguments

acquisitionmethods	Input the corresponding "number" of acquisition techniques as follows: If set 1, the user chooses to process the data based on SWATH-MS. If set 2, the user chooses to process the data based on Peak Intensity. If set 3, the user chooses to process the data based on Spectral Counting.
rawdataset	Input the name of your raw dataset directly obtained from software.
lable	Input the label of your dataset.

Value

prepareinputfile matrix

Examples

library(EVALFQ)
data_s <- PrepareInuputFiles(acquisitionmethods=2,
rawdataset = "MaxQuant_proteinGroups_LFQ.txt", lable = "MaxQuant_LFQ_Label.txt")

idrblab/EVALFQ documentation built on Sept. 29, 2022, 6:34 p.m.