lfqvisualize: lfqvisualize

In idrblab/EVALFQ: R Package for Evaluating Label-Free Proteome Quantification

lfqvisualize

Description

lfqvisualize

Usage

lfqvisualize(object, top = 100)

Arguments

object	The input is the output file of the "lfq_access" or "lfq_spiked".
top	The default 'top' value is 100. You can view the top ranking heatmap you want.

Details

Draw heatmap and save as ProteoLFQ-OUTPUT.Figure-Top.XXX.workflows.pdf. For function definitions and descriptions please use "??ProteoLFQ" command in R.

Examples

library(EVALFQ)
data_q <- PrepareInuputFiles(acquisitionmethods=2,
rawdataset = "MaxQuant_proteinGroups_LFQ.txt", lable = "MaxQuant_LFQ_Label.txt")
lfqevalueall(data_q = data_q,
assum_a="Y", assum_b="Y", assum_c="Y", Ca="1", Cb="1", Cc="1", Cd="1")
lfqvisualize(object = "EVALFQ-OUTPUT.Data-Overall.Ranking.csv", top = 100)

idrblab/EVALFQ documentation built on Sept. 29, 2022, 6:34 p.m.