Perform two-sample t-test to evaluate differential expression of pathways obtained from a gene set
1 | rna.pathwayttest(expr, gs, genelist, ref, samp, set.size = c(10, 500))
|
expr |
numeric matrix or data.frame consisting of gene expression values |
gs |
list. gene set collection |
genelist |
character vector. Names of genes in the dataset. Lenght of genelist and n rows of expr must match |
ref |
numeric vector. Index of reference samples in the array |
samp |
numeric vector. Index of case samples in the array |
set.size |
vector. First and second elements specify the minimum and maximum numbers of gene per pathway respectively |
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