rna.pathwayttest: Pathway t-test

Description Usage Arguments

Description

Perform two-sample t-test to evaluate differential expression of pathways obtained from a gene set

Usage

1
rna.pathwayttest(expr, gs, genelist, ref, samp, set.size = c(10, 500))

Arguments

expr

numeric matrix or data.frame consisting of gene expression values

gs

list. gene set collection

genelist

character vector. Names of genes in the dataset. Lenght of genelist and n rows of expr must match

ref

numeric vector. Index of reference samples in the array

samp

numeric vector. Index of case samples in the array

set.size

vector. First and second elements specify the minimum and maximum numbers of gene per pathway respectively


idroz/bering.rna documentation built on May 18, 2019, 2:33 a.m.