Description Usage Arguments Details Value Author(s) References Examples
View source: R/PSARseq_version01.R
One-step function performing differential expression analysis adjusting population stratification
1 | PSAR(Obj, grps, n.factor = 2)
|
Obj |
An input object: SeqExpressionSet (EDASeq), DGEList (edgeR) or raw count in "matrix" class are available |
grps |
A vector indicating the group of interest for DE test |
n.factor |
The number of factors in non-negative factorization (default = 2) |
See the referenced paper.
resOut |
a list of including two variables: dgeset (DGEList) and fit (glmFit) |
Jungsoo Gim
Jungsoo Gim and Christoph Lange, PSARseq (2017)
1 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.