PSAR: One-step function performing differential expression analysis...
In iedenkim/PSARseq: Population stratification analysis for RNA-Seq data
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
View source: R/PSARseq_version01.R
Description
One-step function performing differential expression analysis adjusting population stratification
Usage
1
PSAR(Obj, grps, n.factor = 2)
Arguments
Obj
An input object: SeqExpressionSet (EDASeq), DGEList (edgeR) or raw count in "matrix" class are available
grps
A vector indicating the group of interest for DE test
n.factor
The number of factors in non-negative factorization (default = 2)
Details
See the referenced paper.
Value
resOut
a list of including two variables: dgeset (DGEList) and fit (glmFit)
Author(s)
Jungsoo Gim
References
Jungsoo Gim and Christoph Lange, PSARseq (2017)
Examples
1
iedenkim/PSARseq documentation built on May 27, 2019, 7:26 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
View source: R/PSARseq_version01.R
Description
One-step function performing differential expression analysis adjusting population stratification
Usage
1 | PSAR(Obj, grps, n.factor = 2)
|
Arguments
Obj |
An input object: SeqExpressionSet (EDASeq), DGEList (edgeR) or raw count in "matrix" class are available |
grps |
A vector indicating the group of interest for DE test |
n.factor |
The number of factors in non-negative factorization (default = 2) |
Details
See the referenced paper.
Value
resOut |
a list of including two variables: dgeset (DGEList) and fit (glmFit) |
Author(s)
Jungsoo Gim
References
Jungsoo Gim and Christoph Lange, PSARseq (2017)
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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