makeblastdb: Make a Blast Database
In iferres/MLSTar: Quick Multi Locus Sequence Typing Analisys
Description
Usage
Arguments
Value
Author(s)
References
View source: R/blastInternals.R
Description
Takes a nucleotide fasta file and produce a blast database.
Usage
1
makeblastdb(infile, hash_index = F, parse_seqids = F)
Arguments
infile
A nucleotide fasta file.
hash_index
logical. See Blast+ manual.
parse_seqids
logical. See Blast+ manual.
Value
The path to the created database.
Author(s)
Ignacio Ferres
References
Altschul, Gish, Miller, Myers & Lipman. (1990) "Basic local
alignment search tool." J. Mol. Biol. 215:403-410.
iferres/MLSTar documentation built on Dec. 30, 2020, 2:42 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/blastInternals.R
Description
Takes a nucleotide fasta file and produce a blast database.
Usage
1 | makeblastdb(infile, hash_index = F, parse_seqids = F)
|
Arguments
infile |
A nucleotide fasta file. |
hash_index |
|
parse_seqids |
|
Value
The path to the created database.
Author(s)
Ignacio Ferres
References
Altschul, Gish, Miller, Myers & Lipman. (1990) "Basic local alignment search tool." J. Mol. Biol. 215:403-410.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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