Man pages for ignacioq/rase
Range Ancestral State Estimation for Phylogeography and Comparative Analyses
| add.dens | Plot the Posterior Density for each Ancestor in 3D Space |
| add.polygons | Plot the Distributions for the Phylogenetic Tips in 3D |
| bigauss_pdf | Bivariate Gaussian PDF |
| bm_ase | Bayesian Ancestral State Estimation with Points |
| bm_loglik_ancestors | Likelihood of ancestors using points |
| bm_loglik_duo | Likelihood of a 2-dimensional point with one daughter and one... |
| bm_loglik_tree | Point Brownian motion tree likelihood |
| bm_loglik_tree_constrained | Range Brownian motion tree likelihood |
| bm_loglik_trio | Fast likelihood of a 2-dimensional point with two daughters... |
| bm_propose_duo | MCMC proposal for a 2-dimensional point with one daughter and... |
| bm_propose_trio | MCMC proposal for a 2-dimensional point with two daughters... |
| data.for.3d | Transform Output for 3D Plotting |
| make_bm_est_sigma2 | Estimate Sigma and Sigma Variance |
| make_bm_loglik_ancestors_poly | Fast likelihood of ancestors using polygons |
| name.poly | Name & Order Polygons According to the Phylogeny |
| phylo.3d | Plots a Phylogenic Tree in 3D |
| point.like.bm | n-dimensional Maximum Likelihood of Point Brownian Motion |
| poly_center | Calculate the Polygon Center |
| ranges.like.bm | n-dimensional Maximumn Likelihood of Range Brownian Motion |
| rase | Bayesian Range Ancestral State Estimation of Polygons |
| rase_data | Psophia Data Used for rase Package |
| rase-package | Range Ancestral State Estimation |
| rase.slice | Ancestral State Estimation At Any Given Time Slice |
| shape.to.rase | Transform a Shapefile into 'owin.object' Format |
| tree.slice | Identify Tree Branches That Intersect With a Given Time... |
