revdep/problems.md

In igordot/babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format

orthogene

• Version: 1.2.0
• GitHub: https://github.com/neurogenomics/orthogene
• Source code: https://github.com/cran/orthogene
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 210

Run revdep_details(, "orthogene") for more info

Newly broken

• checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: [ FAIL 4 | WARN 0 | SKIP 0 | PASS 141 ]

  ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure (test-map_orthologs_babelgene.R:12:5): map_orthologs_babelgene works ── nrow(gene_map_b1) is not more than 13100. Difference: -34 ── Failure (test-map_orthologs_babelgene.R:29:5): map_orthologs_babelgene works ── nrow(gene_map_b3) is not more than 15900. Difference: -27 ── Failure (test-map_orthologs_babelgene.R:42:5): map_orthologs_babelgene works ── nrow(gene_map1) is not more than 29700. Difference: -49 ── Failure (test-map_orthologs_babelgene.R:60:5): map_orthologs_babelgene works ── nrow(gene_map2) is not more than 29700. Difference: -49

  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 141 ] Error: Test failures Execution halted ```

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘DelayedMatrixStats’ All declared Imports should be used. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘aggregate_rows’

igordot/babelgene documentation built on Oct. 6, 2022, 3:27 p.m.