NEWS.md

In igordot/msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

msigdbr (development version)

• Removed the MSigDB data (now a separate package msigdbdf).
• Updated the package versioning scheme so it is not tied to the MSigDB release.
• Added support for mouse versions of MSigDB.
• Updated the annotation fields in the returned gene sets.
• Updated the msigdbr() arguments gs_cat and gs_subcat to gs_collection and gs_subcollection.

msigdbr 2023.1.1

• Based on MSigDB v2023.1.Hs release.
• Not available on CRAN.

msigdbr 2022.1.1

• Based on MSigDB v2022.1.Hs release.
• Not available on CRAN.

msigdbr 7.5.1

• Based on MSigDB v7.5.1 release.

msigdbr 7.4.1

• Based on MSigDB v7.4 release.
• Added Ensembl gene IDs to the returned gene sets.

msigdbr 7.2.1

• Based on MSigDB v7.2 release.
• Added more annotation fields to the returned gene sets.
• Added msigdbr_species() as an alternative to msigdbr_show_species().
• Added msigdbr_collections().

msigdbr 7.1.1

• Based on MSigDB v7.1 release.
• Increased ortholog prediction stringency.

msigdbr 7.0.1

• Based on MSigDB v7.0 release.
• Fixed output when selecting multiple collections.

msigdbr 6.2.1

• Based on MSigDB v6.2 release.

msigdbr 6.1.1

• Based on MSigDB v6.1 release.
• Initial CRAN submission.

igordot/msigdbr documentation built on March 5, 2025, 8:42 p.m.