revdep/README.md

In igordot/msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Platform

|field |value | |:--------|:---------------------------------------------------------------------------| |version |R version 4.5.0 (2025-04-11) | |os |macOS Sequoia 15.4.1 | |system |x86_64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/New_York | |date |2025-05-13 | |rstudio |2025.05.0+496 Mariposa Orchid (desktop) | |pandoc |3.6.4 @ /usr/local/bin/ (via rmarkdown) | |quarto |1.6.42 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/quarto |

Dependencies

|package |old |new |Δ | |:----------|:------|:-----------|:--| |msigdbr |10.0.2 |10.0.2.9001 | | |assertthat |0.2.1 |0.2.1 | | |babelgene |22.9 |22.9 | | |cli |3.6.5 |3.6.5 | | |curl |NA |6.2.2 | | |dplyr |1.1.4 |1.1.4 | | |fansi |1.0.6 |1.0.6 | | |generics |0.1.4 |0.1.4 | | |glue |1.8.0 |1.8.0 | | |lifecycle |1.0.4 |1.0.4 | | |magrittr |2.0.3 |2.0.3 | | |pillar |1.10.2 |1.10.2 | | |pkgconfig |2.0.3 |2.0.3 | | |R6 |2.6.1 |2.6.1 | | |rlang |1.1.6 |1.1.6 | | |tibble |3.2.1 |3.2.1 | | |tidyselect |1.2.1 |1.2.1 | | |utf8 |1.2.5 |1.2.5 | | |vctrs |0.6.5 |0.6.5 | | |withr |3.0.2 |3.0.2 | |

Revdeps

Failed to check (17)

|package |version |error |warning |note | |:---------------------|:-------|:---------|:-------|:----| |CAESAR.Suite |0.2.2 |1 | | | |CatsCradle |1.2.0 |1 | |1 | |ChromSCape |1.17.0 |1 |3 |3 | |EnrichmentBrowser |2.38.0 |1 | |2 | |fgsea |? | | | | |gCrisprTools |2.14.0 |1 | |2 | |GenomicSuperSignature |? | | | | |hypeR |2.5.0 |1 | | | |OSCA.advanced |? | | | | |pairedGSEA|1.8.0 |+1 | | | |pathfindR |2.4.2 |1 | | | |ReducedExperiment|0.99.6 |-2 +1 | |1 | |rGREAT |? | | | | |scFeatures |1.8.0 |1 | |2 | |singleCellTK |? | | | | |sparrow |? | | | | |tidybulk |? | | | |

igordot/msigdbr documentation built on June 15, 2025, 4:29 a.m.