Man pages for igordot/phenomenalist
Analysis Toolkit for PhenoCycler (CODEX) Data in R
| clean_col_names | Clean up data frame column names |
| cluster | Perform clustering |
| create_object | Create a SpatialExperiment object |
| detect_exprs_cols | Detect marker/antibody column names |
| plot_distribution | Plot expression distribution |
| plot_dr | Plot dimensionality reduction |
| plot_heatmap | Generate a heatmap |
| plot_scatter | Generate a generic scatter plot |
| plot_spatial | Plot cells on their spatial coordinates |
| run_umap | Run UMAP dimensionality reduction |
| tidyeval | Tidy eval helpers |
| transform | Transform/normalize expression data |
