plot_heatmap: Generate a heatmap
In igordot/phenomenalist: Analysis Toolkit for PhenoCycler (CODEX) Data in R
plot_heatmap R Documentation
Generate a heatmap
Description
Generate a heatmap
Usage
plot_heatmap(x, group_by, assay = "logcounts", out_dir = NULL)
Arguments
x
A SpatialExperiment object.
group_by
Column metadata field(s) to group by.
assay
A character string indicating which expression values should be used.
out_dir
Name of the output analysis directory. If specified, the plots will be saved there.
Value
A Heatmap object.
igordot/phenomenalist documentation built on March 1, 2024, 1:41 p.m.
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| plot_heatmap | R Documentation |
Generate a heatmap
Description
Generate a heatmap
Usage
plot_heatmap(x, group_by, assay = "logcounts", out_dir = NULL)
Arguments
x |
A SpatialExperiment object. |
group_by |
Column metadata field(s) to group by. |
assay |
A character string indicating which expression values should be used. |
out_dir |
Name of the output analysis directory. If specified, the plots will be saved there. |
Value
A Heatmap object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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