plot_scatter: Generate a generic scatter plot

In igordot/phenomenalist: Analysis Toolkit for PhenoCycler (CODEX) Data in R

Generate a generic scatter plot

Description

Create a scatter plot to display the relationship between two continuous variables. This is essentially a wrapper for ggplot2::geom_point().

Usage

plot_scatter(
  data,
  x,
  y,
  color_by,
  smooth = FALSE,
  range = c(0.01, 0.99),
  title = "",
  aspect_ratio = 1
)

Arguments

data	A data frame.
x	.
y	.
color_by	Column metadata field(s) or feature(s) to color by.
smooth	A logical scalar. Smooth values. Helps to visualize expression patterns in a plot with many overlapping points.
range	A vector of 2 values indicating the minimum and maximum percentiles for the color range. Helps to visualize expression patterns when extreme outliers are present. For example, c(0, 0.99) will not expand the color scale above 99th percentile.
title	Plot title.
aspect_ratio	Aspect ratio of the panel.

Value

A ggplot object.

igordot/phenomenalist documentation built on March 1, 2024, 1:41 p.m.