read.metharray.exp.par: construct RGChannelSet in parallel
In ijcBIT/cnv.methyl: cnv.methyl finds copy number alteration from methylation idat files

read.metharray.exp.par

R Documentation

construct RGChannelSet in parallel

Description

construct RGChannelSet in parallel using foreach

Usage

read.metharray.exp.par(
  targets,
  folder,
  files = NULL,
  copy = FALSE,
  verbose = TRUE,
  arraytype = NULL,
  ncores = NULL,
  extended = FALSE,
  force = TRUE
)

Arguments

`targets`	A sample sheet with the required fields for minfi to load files.
`folder`	this directory will be created as the combination of out and subf. if you save the csv file inside this folder it will be used by minfi::read.450k.sheet.
`files`	Files
`copy`	Change to TRUE if you want to copy files to idats folder. Useful when working in HPC and idats are in ISILON.
`verbose`	Should the function be verbose?
`arraytype`	Methylation array type
`ncores`	number of cores to use.
`extended`	Should a `RGChannelSet` or a `RGChannelSetExtended` be returned.
`force`	Should reading different size IDAT files be forced? See Details.