MakeEpiXprS: Creates a MultiAssay object containing RNA counts, DNA...

In iloveless1/EpiXprS: Associates DNA Methylation with Matched gene Expression

Description

Creates a MultiAssay object containing RNA counts, DNA methylation, and clinical data.

Usage

MakeEpiXprS(
  RNASeqGene = Counts,
  Methyl = Methyl,
  Clinical = Clinical,
  samples = samples
)

Arguments

RNASeqGene	A matrix of RNA counts
Methyl	A matrix of methylation values
Clinical	A data.frame of clinical covariates
samples	A vector of sample names ordered the same as RNASeqGene and Methyl450k

Value

An object of class MultiAssayExperiment containing paired RNA counts and DNA methylation

Examples

data('Testdat', package = 'EpiXprS')
Methyl <- assays(Testdat)$Methyl
Counts <- assays(Testdat)$RNASeqGene
Clinical <- colData(Testdat)
samples <- sampleMap(Testdat)$primary[1:100]
Data <- MakeEpiXprS(RNASeqGene = Counts, Methyl = Methyl, 
Clinical = Clinical, samples = samples)

iloveless1/EpiXprS documentation built on Dec. 20, 2021, 6:56 p.m.