ModelSearch: Allows user to search provided models for CpG sites that are...

In iloveless1/EpiXprS: Associates DNA Methylation with Matched gene Expression

Description

Allows user to search provided models for CpG sites that are associated with expression of genes in any of the cancer models.

Usage

ModelSearch(features, Cancer = object)

Arguments

features	CpG sites to be identified in the model of choice
Cancer	ExperimentHub object cancer model

Value

data.frame containing all instance of CpG sites in models. CpG.site The CpG site included in the model and if it has race specific effects Weight The weight of the CpG site on the expression of the gene Ensembl.ID The Ensembl ID Chromosome The chromosome of the gene TSS The transcription start site of the gene TES The transcription end site of the gene Gene The gene name Overall.D2 The prediction accuracy for the race interaction model EA.D2 The European American specific prediction accuracy AA.D2 The African American specific prediction accuract

Examples

library(ExperimentHub)
eh = ExperimentHub()
x <- query(eh, 'EpiXprS')
Cancer <- x[["EH6022"]]
ModelSearch('cg21837192', Cancer = Cancer)

iloveless1/EpiXprS documentation built on Dec. 20, 2021, 6:56 p.m.