Files in ilyessr/conclus
ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/DataFormatting.R
R/checkFunctions.R
R/constructors.R
R/getters.R
R/globalVar.R
R/loadDataset.R
R/methods-clustering.R
R/methods-dbscan.R
R/methods-export.R
R/methods-markers.R
R/methods-normalization.R
R/methods-plot.R
R/methods-tsne.R
R/runCONCLUS.R
R/setters.R
R/sharedInternals.R
inst/extdata/clusters_table.tsv
inst/extdata/colData.tsv
inst/extdata/countMatrix.tsv
inst/extdata/expected_normalizedMatrix.Rdat
inst/extdata/rowData.tsv
inst/extdata/scrFull.Rdat
inst/extdata/scrLight.Rdat
inst/script/all_generate.R
inst/script/generate_clusters_table.R
inst/script/generate_colData.R
inst/script/generate_countMatrix.R
inst/script/generate_expected_normalizedMatrix.R
inst/script/generate_rowData.R
inst/script/generate_scrFull.R
inst/script/generate_scrLight.R
man/Dbscan-class.Rd
man/Tsne-class.Rd
man/addClustering-scRNAseq.Rd
man/calculateClustersSimilarity-scRNAseq.Rd
man/clusterCellsInternal-scRNAseq.Rd
man/conclusCacheClear.Rd
man/constructors.Rd
man/exportResults-scRNAseq.Rd
man/generateTSNECoordinates-scRNAseq.Rd
man/getters.Rd
man/loadDataOrMatrix.Rd
man/normaliseCountMatrix-scRNAseq.Rd
man/plotCellHeatmap.Rd
man/plotCellSimilarity-scRNAseq.Rd
man/plotClusteredTSNE-scRNAseq.Rd
man/plotClustersSimilarity.Rd
man/plotGeneExpression-scRNAseq.Rd
man/rankGenes-scRNAseq.Rd
man/retrieveFromGEO.Rd
man/retrieveGenesInfo-scRNAseq.Rd
man/retrieveTableClustersCells-scRNAseq.Rd
man/retrieveTopClustersMarkers-scRNAseq.Rd
man/runCONCLUS.Rd
man/runDBSCAN-scRNAseq.Rd
man/scRNAseq-class.Rd
man/setters.Rd
man/testClustering-scRNAseq.Rd
tests/test-all.R
tests/testthat/test_getters.R
tests/testthat/test_loadData.R
tests/testthat/test_scRNAseq-methods.R
tests/testthat/test_setters.R
vignettes/conclus_vignette.Rmd
vignettes/figures/10_cellHeatmapNoMean.png
vignettes/figures/11_Maob_cluster8.png
vignettes/figures/12_Pcbd1_cluster8.png
vignettes/figures/13_Serpinf2_cluster8.png
vignettes/figures/14_Cldn1_cluster8.png
vignettes/figures/15_updatedCellSim.png
vignettes/figures/16_updatedCellHeatmap.png
vignettes/figures/17_updatedTSNE.png
vignettes/figures/18_Col1a1_cluster2.png
vignettes/figures/19_Cdk8_cluster9.png
vignettes/figures/1_distancegraph.png
vignettes/figures/2_tsne.png
vignettes/figures/3_clusterplot.png
vignettes/figures/4_tSNEclusters.png
vignettes/figures/5_tSNEnoColor.png
vignettes/figures/6_tSNEstate.png
vignettes/figures/7_cellSimilarity.png
vignettes/figures/8_clustersim.png
vignettes/figures/9_cellHeatmap.png
