buildcodon: buildcodon
In im3sanger/dndscv: Poisson-based dN/dS models to quantify natural selection in somatic evolution
buildcodon R Documentation
buildcodon
Description
This function takes a RefCDS object as input and adds to it two fields required to run the codondnds function. Usage: RefCDS = buildcodon(RefCDS)
Usage
buildcodon(refcds, numcode = 1)
Arguments
refcds
Input RefCDS object
numcode
NCBI genetic code number (default = 1; standard genetic code). To see the list of genetic codes supported use: ? seqinr::translate
Details
Martincorena I, et al. (2017) Universal patterns of selection in cancer and somatic tissues. Cell. 171(5):1029-1041.
Author(s)
Inigo Martincorena (Wellcome Sanger Institute)
im3sanger/dndscv documentation built on Oct. 1, 2023, 1:05 p.m.
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| buildcodon | R Documentation |
buildcodon
Description
This function takes a RefCDS object as input and adds to it two fields required to run the codondnds function. Usage: RefCDS = buildcodon(RefCDS)
Usage
buildcodon(refcds, numcode = 1)
Arguments
refcds |
Input RefCDS object |
numcode |
NCBI genetic code number (default = 1; standard genetic code). To see the list of genetic codes supported use: ? seqinr::translate |
Details
Martincorena I, et al. (2017) Universal patterns of selection in cancer and somatic tissues. Cell. 171(5):1029-1041.
Author(s)
Inigo Martincorena (Wellcome Sanger Institute)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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