getDupMatStats: Report duplication stats on regions

View source: R/getDupMatStats.R

getDupMatStatsR Documentation

Report duplication stats on regions

Description

getDupMatStats Report duplication stats based on the data calculated in the duplication matrix

Usage

getDupMatStats(DupMat)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

Value

A data.frame containing the stats about the number of genes covered (1+ tags) and the number of genes containing duplicates (1+)

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
getDupMatStats(DupMat=dm)

imbforge/dupRadar documentation built on Oct. 18, 2023, 8:54 a.m.