getDynamicRange: Dynamic range

View source: R/getDynamicRange.R

getDynamicRangeR Documentation

Dynamic range

Description

getDynamicRange Calculate the dynamic range of the RNAseq experiment

Usage

getDynamicRange(dm)

Arguments

dm

The duplication matrix calculated by analyzeDuprates

Details

This function calculates the dynamic range of the RNAseq eperiment

Value

A list with 2 elements, containing the dynamic range counting all reads and the dynamic range after removing duplicates.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# calculate the dynamic range
getDynamicRange(dm)

imbforge/dupRadar documentation built on Oct. 18, 2023, 8:54 a.m.