sppPeaksToGRanges: Convert output from SPP to GRanges object
In imbforge/encodeChIPqc: A set of useful ChIPseq QC metrics from the ENCODE project

Convert the peaks called by spp to a GRanges object.

1	sppPeaksToGRanges(peaks)

peaks

Output of find.binding.positions() from the spp package.

sppPeaksToGRanges() takes the output of find.binding.positions() from the spp package and converts it into a GRanges object.

spp data converted to GRanges object.

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bc <- calculateBindingCharacteristics("IP.bam", "input.bam")
peaks <- callPeaks(bc$chip.data, bc$input.data, bc$bc)
sppPeaksToGRanges(peaks)

imbforge/encodeChIPqc documentation built on May 18, 2019, 4:45 a.m.

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