Description Usage Arguments Details Value Examples
Plot a gplots
heatmap with the top variant regions.
1 | topHeatmap(normalizedCounts, ...)
|
normalizedCounts |
The normalized |
... |
Extra parameters sent to |
This function uses the heatmap.2
function of gplots
to assess
the relationship between samples.
The plotted cluster matrix.
1 2 3 4 5 6 | counts <- tagCount(
samples=c("ctl1.bam", "ctl2.bam", "chip1.bam", "chip2.bam"),
org="Mmusculus", assembly="UCSC", version="mm9"
)
nCounts <- normalizeTagCount(counts)
topHeatmap(nCounts)
|
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