annovar_plink_conversion: Convert PLINK bim file to ANNOVAR input

In imbs-hl/imbs: Collection of functions used at the IMBS

Description

Convert PLINK bim file to ANNOVAR input

Usage

annovar_plink_conversion(bim.file, output.prefix, chr)

Arguments

bim.file	[string] The PLINK bim file.
output.prefix	[string] The basename of the output files.
chr	[numeric] Numeric vector of chromosomes to consider.

Details

Uses awk to transform information from bim file to valid input to ANNOVAR.

Value

Nothing.

imbs-hl/imbs documentation built on Sept. 6, 2019, 11:05 p.m.