manhattan_plot: Create a manhattan plot
In imbs-hl/imbs: Collection of functions used at the IMBS

Create a manhattan plot from a data.frame.

1
2
3

manhattan_plot(data, threshold, thin = FALSE,
  thin.param = list(logp.thin.thresh = 5, logp.thin.rate = 0.1, buffer =
  1e+06), header = list(chr = "CHR", pos = "BP", pval = "P"))

`data`	[`data.frame`] A `data.table` object containing at least information about chromosome, position and p value.
`threshold`	[`number`] Single numeric to draw a threshold line at. On p value scale. Optional.
`thin`	[`logical`] Should the data be thinned?
`thin.param`	[`list`] A list with the following elements: `logp.thin.thresh` (`number`), `logp.thin.rate` (`number`) and `buffer` (`integer`) indicating at which rate points with a low log p value should be removed and how many base pairs at the start and end of each chromosome should not be excluded from thinning.
`header`	[`list`] A list with the following elements: `chr`, `pos` and `pval` (all `character`) indicating the columns to use for chromosome, position and p value information.