Files in imkeller/gscreend
Analysis of pooled genetic screens
.github/workflows/R-CMD-check.yaml
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/AllMethods.R
R/DataInput.R
R/GeneRanking.R
R/Normalization.R
R/QualityControl.R
R/core.R
R/sgrnaRanking.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/gscreend_analysed_experiment.RData
inst/extdata/simulated_counts.txt
inst/script/generate_simulated_counts.txt
man/GeneData-PoolScreenExp-method.Rd
man/GeneData.Rd
man/PoolScreenExp-class.Rd
man/ResultsTable.Rd
man/RunGscreend.Rd
man/assignGeneData.Rd
man/calculateIntervalFits.Rd
man/calculateLFC.Rd
man/calculatePValues.Rd
man/createPoolScreenExp.Rd
man/createPoolScreenExpFromSE.Rd
man/defineFittingIntervals.Rd
man/fit_least_quantile.Rd
man/normalizePoolScreenExp.Rd
man/plotModelParameters.Rd
man/plotReplicateCorrelation.Rd
man/sgRNAData-PoolScreenExp-method.Rd
man/sgRNAData.Rd
tests/testthat.R
tests/testthat/test_1_input.R
tests/testthat/test_2_QC.R
tests/testthat/test_3_calculations.R
vignettes/gscreend_simulated_data.Rmd
