Man pages for immunogenomics/scpost
Simulates single-cell datasets from input data
| calcBinomCI | Calculate a binomial confidence interval |
| createParamTable | Create a table of parameters that will be used for... |
| distribSamplePerBatch | Distribute each sample into its own batch |
| distribSamples | Distribute samples equally into batches in equal numbers of... |
| distribSplitSamples | Split each sample into a specified number of subsamples... |
| estimateFreqVar | Estimate the mean and variation in each cell state's... |
| estimatePCVar | Estimate the sources of variation in principal component (PC)... |
| generateBatchShifts | Simulate batch shifts for each cell state |
| generateFreqs | Generate cell state frequency distributions for samples |
| generateSampleShifts | Simulate sample shifts for each cell state |
| generateSamplesInBatches | Simulate the samples in a single designated batch |
| getInducedFreqs | Generate a cell state frequency distribution with induced... |
| getModVars | Retrieve variables from models fitted in the "estimatePCVar"... |
| getParsFromResFile | Retrieve the parameters from a simulation |
| getPowerFromRes | Retrieve the power results from simulations |
| getPvals.MASC | Test clusters for an expansion (or depletion) between... |
| induceFC.capped | Induce a fold change in an element in a cluster |
| insertElems | Insert an element or vector of elements to designated... |
| mascCalc | Perform a test for differential abundance for a cell state... |
| pipe | Pipe operator |
| ra_FibObj | List of metadata and PC embeddings for only the fibroblasts... |
| ra_HarmObj | List of metadata and PC embeddings for the RA dataset after... |
| ra_PreHarmObj | List of metadata and PC embeddings for the RA dataset before... |
| simDataset.base | Simulate a dataset and save the results |
| simDataset.withMASC | Simulate a dataset and save the results (metadata table and... |
| simPCs | Simulate principal component locations for simulated cells |
| zero_range | Simple implementation from Hadley Wickham that checks if all... |
