getPowerFromRes: Retrieve the power results from simulations

In immunogenomics/scpost: Simulates single-cell datasets from input data

Description

Given results, this function will calculate the number of simulations in which at least one cell state cluster had a significant p-value frorm MASC analysis, meaning the cluster was expanded or depleted between conditions.

Usage

getPowerFromRes(
  resFiles,
  resTables,
  threshold = 0.05,
  z = 1.96,
  stratByClus = FALSE
)

Arguments

resFiles	A list of filenames that refer to the results from simulating a dataset
resTables	The MASC results tables obtained from MASC analysis on simulated datasets
threshold	The p-value threshold that determines significance
z	Determines the size of the confidence interval (CI) where z represents the % CI
stratByClus	Boolean that determines whether the power results will be calculated as the aggregate of all clusters or stratified by cluster.

Value

Returns a dataframe containing the power calculations from the simulated datasets

immunogenomics/scpost documentation built on July 28, 2021, 4:03 a.m.